Splicing efficiency analysis and annotation
Web7 Oct 2024 · In eukaryotes, alternative splicing (AS) is a crucial regulatory mechanism that modulates mRNA diversity and stability. ... RNA-Seq data analysis and annotation revealed the importance of calcium, abscisic acid, and reactive oxygen species signaling in cold stress response. Besides, the low temperature rapidly induced multiple splicing factors ... Web4 Dec 2024 · In total, the Araport11 structural annotation dataset contains 119,097 splice site pairs (introns) in nuclear protein coding genes that are spliced out of the primary transcript to produce the representative transcript.
Splicing efficiency analysis and annotation
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Web2 Oct 2024 · To this end, we compare AS patterns, splice sites and splicing efficiency on a genome-wide level. We detect DETs with four different AS software tools and compare … Web7 Apr 2024 · Transformer-2 (tra-2) is an important sex-determining gene in insects. It also plays a role in the reproduction of phytoseiid mites. We performed bioinformatic analyses …
Web7 Jun 2024 · Among all regulations, alternative splicing (AS), defined as the inclusion of different exons into mature mRNA, is an important mechanism that could dramatically increase the diversity of transcriptome and proteome, and hence regulating different physiological and developmental processes in eukaryote. 2,3 Furthermore, AS could also … Web13 Feb 2015 · Analysis of RNA-seq alignments identified developmentally regulated alternative splicing, promoter use, and 3' end formation. Conclusions: We report genome sequence, gene models, functional annotations, and RNA-Seq expression data that provide an important new resource enabling high throughput studies in blueberry.
Web26 Nov 2024 · Alternative splicing (AS) is a process during gene expression that results in a single gene coding for different protein variants. AS contributes to transcriptome and proteome diversity. In order to characterize AS in pigs, genome-wide transcripts and AS events were detected using RNA sequencing of 34 different tissues in Duroc pigs. Web2 Dec 2024 · Alternative splicing (AS) is an important aspect of gene regulation. Nevertheless, its role in molecular processes and pathobiology is far from understood. A roadblock is that tools for the functional analysis of AS-set events are lacking.
Web12 Feb 2024 · At the molecular level, splicing and AS involves recognition and elimination of intronic regions of a precursor messenger RNA (pre-mRNA) and joining of exonic regions …
Web11 Dec 2024 · We demonstrate LeafCutter’s utility by applying it to three important problems: (1) the identification of differential splicing across conditions, (2) the … facts about deaf children ukWeb14 Apr 2024 · Accurately and rapidly counting the number of maize tassels is critical for maize breeding, management, and monitoring the growth stage of maize plants. With the … facts about death in islamWeb15 Feb 2024 · A genome-wide analysis revealed that SKIP mediates the alternative splicing of many genes under salt-stress conditions, and that most of the alternative splicing … facts about deaf schoolsWeb4 Oct 2024 · In the analysis of RNA-seq data from biological samples, the quantification software will likely be challenged by discrepancies between the annotation model and the … facts about deadpoolWeb19 Sep 2024 · SEAA: Splicing Efficiency Analysis and Annotation The aim of 'SEAA' is to provide convenient and rapid splicing efficiency calculation and splicing sites annotation function using next generation sequencing data. Aligned files and a processed splicing … does yogurt lower testosteroneWeb24 Sep 2024 · September 19, 2024 Title Splicing Efficiency Analysis and Annotation Version 0.9.6 Description The aim of 'SEAA' is to provide convenient and rapid splicing … does yogurt interfere with antibioticsWeb7 Sep 2024 · The excision of introns from pre-mRNA is an essential step in mRNA processing. We developed LeafCutter to study sample and population variation in intron … facts about dean lewis