Tls anisotropic refinement
Webis described that analyses these 21 TLS rigid-body displacement parameters and their relation with the principal axes of the rigid body, from the output of the segmented … WebTLS parameters refines anisotropic displacements for large groups of atoms, typically individual domains or chains. Because this introduces only ten parameters for each …
Tls anisotropic refinement
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WebFeb 1, 2001 · TLS refinement is therefore fast and can be used routinely. Examples of TLS refinement are given for glyceraldehyde-3-phosphate dehydrogenase (GAPDH) and a … http://www.ysbl.york.ac.uk/~cowtan/ccp4wiki/wiki26.html
WebUniaxially textured TlBaSrCa/sub 2/Cu/sub 3/O/sub 9/ bulk ceramics have been fabricated by slip casting in magnetic fields up to 9 Tesla followed by sintering and reduction … WebNov 2, 2007 · The theory underlying TLS parameterization has been presented in detail by Schomaker and Trueblood 18., 19. and Howlin et al. 20 In summary, apart from improving agreement between an atomic structure and diffraction data by approximating anisotropic disorder of atoms, TLS refinement yields translational, librational and screw tensors for …
WebOct 30, 1991 · The anisotropic displacements of selected rigid groups in bovine ribonuclease A have been refined from X-ray diffraction data by the application of the rigid-body TLS model. The rigid groups chosen were the side chains of tyrosine, histidine and phenylalanine and the planar side chains of aspartic acid, glutamic acid, glutamine, …
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WebAnisotropic Refinement NCS constrained refinement (from 5.6.0087) EM fit related keywords Geometry keywords Using segment id External distance, angle etc restraints Harmonic restraints and special positions (jelly body etc) Torsion angle restraints VDW restraints (excluding antibumping between specified atoms - 5.6.0065) roadwire reviewsWebJul 2, 2012 · I recently started to refine a structure with phenix.refine for a first It is a 3A dataset with NCS of 8. use TLS groups as well as individual B-factors (data/parameter ratio should be fine with ncs of 8) and after several cycles of refinement i get the Rfac of 20 and Rfree of 24 which is quite good (i also use roadwire logoWebDec 14, 2015 · Typical procedure: Specify TLS groups (currently via TLSIN file). Use anisotropic scaling. Set B values to constant value Refine TLS parameters (and scaling parameters) against ML residual. Refine coordinates and residual B factors. Slide 17 Slide 18 Initial TLSIN file TLS Chain O NAD binding RANGE 'O 1.' 'O 137.' ALL RANGE 'O 303.' 'O … roadwire leather f150WebAug 14, 2007 · TLS Refinement, Overall Anisotropic B Factor, and Bulk Solvent Modeling. TLS (Schomaker and Trueblood, 1968) was used to describe the external motion of the molecules because the normal modes only account for the internal motion. REFMAC5 was used to determine the TLS parameters for the rigid body composed of all of the atoms in … snhs iom teachersWebTLS and individual anisotropic ADP cannot be refined at once for the same group Certain refinement strategies are not available for joint X-ray/neutron refinement No NCS constraints (restraints only) Atoms with anisotropic ADP in NCS groups No Simulated Annealing for selected fragments roadwire leather seats reviewhttp://my.yetnet.ch/dergutemensch/crystallography/refinement.htm roadwire leather vs katzkinWebSimulated annealing (SA) is most useful early in refinement, when the model is far from convergence. Manually built models, or MR solutions involving significant local conformational changes, are common inputs where SA can improve over simple gradient-driven refinement. It is generally less helpful later in refinement, and/or at high resolution. roadwire leather vs katzkin leather